学術論文

1. Mitsuko Hayashi-Nishino, Kota Aoki, Akihiro Kishimoto, Yuna Takeuchi, Aiko Fukushima, Kazushi Uchida, Tomio Echigo, Yasushi Yagi, Mika Hirose, Kenji Iwasaki, Eitaro Shin'ya, Takashi Washio, Chikara Furusawa, Kunihiko Nishino. Identification of Bacterial Drug-Resistant Cells by the Convolutional Neural Network in Transmission Electron Microscope Images. Front. Microbiol., 13:839718. Mar 15, 2022. doi: 10.3389/fmicb.2022.839718
2. Kunio Nakata, Naoyuki Miyazaki, Hiroki Yamaguchi, Mika Hirose, Tatsuki Kashiwagi, Nidamarthi H V Kutumbarao, Osamu Miyashita, Florence Tama, Hiroshi Miyano, Toshimi Mizukoshi, Kenji Iwasaki. High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis. J. Struct. Biol., 214(2):107842. Feb 15, 2022. doi: 10.1016/j.jsb.2022.107842. Online ahead of print.
3. Ryosuke Kamiya, Jumpei Uchiyama, Shigenobu Matsuzaki, Kazuyoshi Murata, Kenji Iwasaki and Naoyuki Miyazaki. Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy. Structure, S0969-2126(21)00329-4, Sep 27, 2021. doi: 10.1016/j.str.2021.09.001.
4. Masataka Ohashi, Fumio Hosokawa, Takao Shinkawa and Kenji Iwasaki. Evaluation of automated particle picking for cryogenic electron microscopy using high-precision transmission electron microscope simulation based on a multi-slice method. Acta Crystallogr. D, 77(Pt 7), 966-979, July, 2021. doi: 10.1107/S2059798321005106.
5. Risako Tamura-Sakaguchi, Rie Aruga, Mika Hirose, Toru Ekimoto, Takuya Miyake, Yohei Hizukuri, Rika Oi, Mika K Kaneko, Yukinari Kato, Yoshinori Akiyama, Mitsunori Ikeguchi, Kenji Iwasaki, Terukazu Nogi. Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Crystallogr. D Struct. Biol., 77(Pt 5), 645-662, May, 2021. doi: 10.1107/S2059798321002527.
6. Kouta Mayanagi, Keisuke Oki, Naoyuki Miyazaki, Sonoko Ishino, Takeshi Yamagami, Kosuke Morikawa, Kenji Iwasaki, Daisuke Kohda, Tsuyoshi Shirai, Yoshizumi Ishino. Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. BMC Biology, 18(1), 152, Oct, 2020. doi: 10.1186/s12915-020-00889-y.
7. Kenta Okamoto, Ricardo J. Ferreira, Daniel S. D. Larsson, Filipe R. N. C. Maia, Haruhiko Isawa, Kyoko Sawabe, Kazuyoshi Murata, Janos Hajdu, Kenji Iwasaki, Peter M. Kasson, Naoyuki Miyazaki. Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus. Structure, 28(8), 888-896.e3, Aug, 2020. doi:10.1016/j.str.2020.04.016.
8. Chihong Song, Reiko Takai-Todaka, Motohiro Miki, Kei Haga, Akira Fujimoto, Ryoka Ishiyama, Kazuki Oikawa, Masaru Yokoyama, Naoyuki Miyazaki, Kenji Iwasaki, Kosuke Murakami, Kazuhiko Katayama, Kazuyoshi Murata. Dynamic rotation of the protruding domain enhances the infectivity of norovirus. PLoS Pathogens, 16(7), e1008619, Jul, 2020. doi:10.137/journal.ppat.1008619.
9. Masafumi Tanaka, Hisayasu Miyake, Satoko Oka, Shintaro Maeda, Kenji Iwasaki, Takahiro Mukai. Effects of charged lipids on the physicochemical and biological properties of lipid–styrene maleic acid copolymer discoidal particles. Biochim. Biophys. Acta. Biomembr., 1862(5),183209, May, 2020. doi: 10.1016/j.bbamem.2020.183209.
10. Tomohito Yamada, Toru Yoshida, Akihiro Kawamoto, Kaoru Mitsuoka, Kenji Iwasaki, Hideaki Tsuge. Cryo-EM structures reveal translocation unfolding in the clostridial binary iota toxin complex. Nature Struct Mol Biol., 27(3), 288-296, Mar, 2020. doi:10.1038/s41594-020-0388-6.
11. Tatsuki Kunoh, Kana Morinaga, Shinya Sugimoto, Shun Miyazaki, Masanori Toyofuku, Kenji Iwasaki, Nobuhiko Nomura, Andrew S. Utada. Polyfunctional Nanofibril Appendages Mediate Attachment, Filamentation, and Filament Adaptability in Leptothrix cholodnii. ACS Nano, 14(5), 5288-5297, Dec, 2019. doi:10.1021/acsnano.9b04663. 
12. Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah, Tamako Nishimura, Kazuhiro Takemura, Kohei Takeshita, Satoru Kubota, Naoyuki Miyazaki, Wan Nurul Izzati Wan Mohamad Noor, Takehiko Inaba, Nhung Thi Hong Nguyen, Sayaka Hamada-Nakahara, Kayoko Oono-Yakura, Masashi Tachikawa, Kenji Iwasaki, Daisuke Kohda, Masaki Yamamoto, Akio Kitao, Atsushi Shimada, Shiro Suetsugu. Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nature Commun., 10, 4763, 2019. doi:10.1038/s41467-019-12738-w.　　
13. Kouta Mayanagi, 　Kazumi Saikusa, Naoyuki Miyazaki, Satoko Akashi, Kenji Iwasaki, Yoshifumi Nishimura, Kousuke Morikawa, and Yasuo Tsunaka. Structural visualization of key steps in nucleosome reorganization by human FACT. Sci. Rep., 9,10183, 2019. doi: 10.1038/s41598-019-46617-7.
14. Ali D. Malay, Naoyuki Miyazaki, Artur Biela, Soumyananda Chakraborti, Karolina Majsterkiewicz, Izabela Stupka Craig S. Kaplan, Agnieszka Kowalczyk, Bernard M. A. G. Piette, Georg K. A. Hochberg, Di Wu, Tomasz P. Wrobel, Adam Fineberg, Manish S. Kushwah, Mitja Kelemen, Primož Vavpetič, Primož Pelicon, Philipp Kukura, Justin L. P. Benesch, Kenji Iwasaki and Jonathan G. Heddle. An ultra-stable gold-coordinated protein cage displaying reversible assembly. Nature, 569, 438-442, 2019. doi: 10.1038/s41586-019-1185-4.
15. Kenta Tsutsumi, Ryo Yonehara, Etsuko Ishizaka-Ikeda, Naoyuki Miyazaki, Shintaro Maeda, Kenji Iwasaki, Atsushi Nakagawa, Eiki Yamashita. Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism. Nat Commun., 10, Article number 1520, 2019. doi:10.1038/s41467-019-09463-9.
16. Nai-Chi Chen, Masato Yoshimura, Naoyuki Miyazaki, Hong-Hsiang Guan, Phimonphan Chuankhayan, Chien-Chih Lin, Shao-Kang Chen, Pei-Ju Lin, Yen-Chieh Huang, Kenji Iwasaki, Atsushi Nakagawa, Sunney I. Chen, Chun-Jung Chen. The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism. Commun Biol., 2, 1-14, 2019. doi:10.101038/s42003-019-0311-z.